PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.5LE8X
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 468aa    MW: 51833.2 Da    PI: 8.743
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.5LE8XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-115480127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C+++ rtG C++G++C+F+H+p
  Aradu.5LE8X 54 PGEPDCSYYIRTGLCRFGATCRFNHPP 80
                 5789*********************97 PP

2zf-CCCH31.82.4e-10171190827
                  GGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                  ++++tGtCk+G++CkF+H++
  Aradu.5LE8X 171 YYLKTGTCKFGATCKFHHPR 190
                  9*****************96 PP

3zf-CCCH375.8e-12212236327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C +++rtG+Ck+G++CkF+H++
  Aradu.5LE8X 212 EAECAYYLRTGQCKFGNTCKFHHPQ 236
                  689********************97 PP

4zf-CCCH37.83.2e-12329355127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG Ck+G+ C+F+H++
  Aradu.5LE8X 329 PGQPECQFYMKTGDCKFGAVCRFHHPR 355
                  5789*********************96 PP

5zf-CCCH382.8e-12375401127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC f++r+G+Ck+G++CkF H++
  Aradu.5LE8X 375 PGEPLCVFYSRYGICKFGPSCKFDHPM 401
                  589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-45380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9765481IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-85580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-55881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-45979IPR000571Zinc finger, CCCH-type
SMARTSM003560.35168190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4171190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.493171191IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-8171190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159209237IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5209236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6211237IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9212236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4215235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596328356IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6328355IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8330355IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5332358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-5334356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821374402IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7374401IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9376401IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5377401IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4379399IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLQFPCPVKA SLKDGALYAT AMLTCSYDII SDAMWQMNLR SSETMEPGPY PEHPGEPDCS  60
YYIRTGLCRF GATCRFNHPP NRKLVETHIV ILSYCRCTDE RRVPRKDRAA RMSGMYLFLN  120
ECISLVNGTR AKEIIIYLKS GIIRMCSPPP LFSRMRVLGW GGDVHFFASS YYLKTGTCKF  180
GATCKFHHPR DKAGIAGRVA LNILGYPLRP NEAECAYYLR TGQCKFGNTC KFHHPQPSNM  240
VLSMRSSPVY PTVHSPTTPG REWFRYLAGG QMGSDSTQQS VGNGQTYASS RQGESANAGS  300
QGAYSQYRSG SVPVGFYALQ RENIFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERLIP  360
APDCLLSPIG LPLRPGEPLC VFYSRYGICK FGPSCKFDHP MGIFAYNMST SPSADASGRR  420
MLGSSSGTAA LNLSPEGLVE SGSAKPRRLS LSETRQLPSS DDNIDDEG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1465922e-79BT146592.1 Lotus japonicus clone JCVI-FLLj-22F14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016194000.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLI1L6B10.0I1L6B1_SOYBN; Uncharacterized protein
STRINGGLYMA09G38650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.11e-119zinc finger nuclease 3